Nonprofit Payroll & HR Services

Mission-Driven Work Deserves Clear Systems

CTR supports nonprofits with payroll, HR, timekeeping and compliance solutions built for the unique demands of grant funded programs, labor allocation and audit readiness.

From small community organizations to multi-site nonprofits, we help streamline operations, reduce administrative burden and protect compliance so your team can stay focused on impact.

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Industry Challenges We Help Solve

Nonprofit payroll is complex and funding-driven. Teams often work across programs, grants and cost centers, which creates time tracking and labor allocation pressure. Compliance mistakes can jeopardize funding and donor trust. Accurate systems keep you audit-ready.

Experts Who Understand Your World

CTR understands multi-program payroll, grant labor allocation and wage and hour compliance. You work with a dedicated support representative who knows your organization and responds when you call. No call centers. No generic answers.

Drive Efficiency and Quality

Automated time tracking. Streamlined onboarding. Real-time labor reporting. CTR reduces manual work, improves visibility across programs and helps leadership make confident decisions with clear, audit-ready reporting.

Grant & Labor Allocation

Track time and labor by program, grant or cost center to support accurate reporting and audit readiness.

Mobile Time & Attendance

Capture accurate time, reduce manual timesheets and improve visibility for teams working in the field, across sites or on variable schedules.

Benefits, PTO & Self-Service Portal

Give staff easy access to pay information, PTO balances, benefits enrollment and HR resources in one centralized portal, reducing administrative burden.

Payroll Compliance & Wage & Hour Confidence

Support accurate overtime calculations, classification consistency and audit-ready payroll reporting.

Onboarding & Document Management

Streamline hiring with digital onboarding, electronic forms and centralized employee records to keep your organization organized and consistent.

Dedicated Support Team

Work with a dedicated support representative who understands nonprofit operations, compliance pressure and the importance of responsive help when questions arise.

Hear It From Our Clients

I'm certain it gets redundant whenever there is a new person who comes into an agency and the system was already set up. I came in blind and had an entire agency looking to me to be brought up to speed on the processes so I could support the entire agency - regardless as to the request. I knew what trainings I needed and admitted upfront that I had to be told what trainings I didn't know I needed. Along with a short window and quick turnaround time, Sandy and everyone appeared to understand the challenges I faced as soon as I walked in. I didn't have a single person to shadow or show me the system. Yet, I have bee able to be successful and support my agency in every facet possible. Without the support we (I) received, I do not believe we could have been successful with our implementation, much less successfully addressing our outstanding citations.

-Greg, Nonprofit Director

Expert Support, Every Step of the Way

From onboarding new hires and managing time tracking across programs to supporting grant allocation reporting and payroll compliance, CTR delivers responsive, personalized support.

Nonprofit leaders often cite our proactive guidance and real human support as key advantages, especially when compliance questions come up.